Layout Class Reference

Inheritance diagram for Layout:

Collaboration diagram for Layout:

Public Member Functions
	Layout ()
	Constructor.
AllVertices &	getVertices () const
	Returns reference to Vertices.
virtual void	setup ()
virtual void	registerGraphProperties ()
	Register vertex properties with the GraphManager.
virtual void	loadParameters ()
	Load member variables from configuration files. Registered to OperationManager as Operation::loadParameters.
virtual void	printParameters () const
	Prints out all parameters to logging file. Registered to OperationManager as Operation::printParameters.
virtual void	generateVertexTypeMap ()
	Creates a neurons type map.
virtual void	initStarterMap ()
virtual edgeType	edgType (int srcVertex, int destVertex)=0
virtual int	getNumVertices () const
	Returns the number of vertices managed by the Layout.
template<class Archive >
void	serialize (Archive &archive)
	Cereal serialization method.

Public Attributes
VectorMatrix	xloc_
	Store neuron i's x location.
VectorMatrix	yloc_
	Store neuron i's y location.
CompleteMatrix	dist2_
	Inter-neuron distance squared.
CompleteMatrix	dist_
	The true inter-neuron distance.
vector< int >	probedNeuronList_
	Probed neurons list. // ToDo: Move this to Hdf5 recorder once its implemented in project -chris.
vector< vertexType >	vertexTypeMap_
	The vertex type mao, (INH, EXC).
vector< bool >	starterMap_
	The starter existence map (T/F).
BGSIZE	numEndogenouslyActiveNeurons_
	Number of endogenously active neurons.

Protected Attributes
unique_ptr< AllVertices >	vertices_
log4cplus::Logger	fileLogger_
int	numVertices_
	Total number of vertices in the graph.

Detailed Description

Definition at line 30 of file Layout.h.

Constructor & Destructor Documentation

Layout()

Layout::Layout

(

)

Constructor.

Definition at line 20 of file Layout.cpp.

Member Function Documentation

edgType()

virtual edgeType Layout::edgType ( int srcVertex, int destVertex )

pure virtual

Returns the type of synapse at the given coordinates

Parameters

srcVertex	integer that points to a Neuron in the type map as a source.
destVertex	integer that points to a Neuron in the type map as a destination.

Returns

type of the synapse

Implemented in Layout911, and LayoutNeuro.

generateVertexTypeMap()

void Layout::generateVertexTypeMap ( )

virtual

Creates a neurons type map.

Creates a vertex type map.

Parameters

numVertices

number of the vertices to have in the type map.

Reimplemented in Layout911, and LayoutNeuro.

Definition at line 166 of file Layout.cpp.

getNumVertices()

int Layout::getNumVertices ( ) const

virtual

Returns the number of vertices managed by the Layout.

Returns

The number of vertices managed by the Layout

Definition at line 61 of file Layout.cpp.

getVertices()

AllVertices & Layout::getVertices

(

)

const

Returns reference to Vertices.

Definition at line 56 of file Layout.cpp.

initStarterMap()

void Layout::initStarterMap ( )

virtual

Populates the starter map. Selects num_endogenously_active_neurons excitory neurons and converts them into starter neurons.

Populates the starter map. Selects num_endogenously_active_neurons excitory neurons and converts them into starter neurons.

Parameters

numVertices

number of vertices to have in the map.

Reimplemented in LayoutNeuro.

Definition at line 175 of file Layout.cpp.

loadParameters()

void Layout::loadParameters ( )

virtual

Load member variables from configuration files. Registered to OperationManager as Operation::loadParameters.

Load member variables from configuration file. Registered to OperationManager as Operations::op::loadParameters.

Reimplemented in Layout911.

Definition at line 67 of file Layout.cpp.

printParameters()

void Layout::printParameters ( ) const

virtual

Prints out all parameters to logging file. Registered to OperationManager as Operation::printParameters.

Reimplemented in Layout911, and LayoutNeuro.

Definition at line 135 of file Layout.cpp.

registerGraphProperties()

void Layout::registerGraphProperties ( )

virtual

Register vertex properties with the GraphManager.

Reimplemented in Layout911, and LayoutNeuro.

Definition at line 72 of file Layout.cpp.

serialize()

template<class Archive >

void Layout::serialize

(

Archive &

archive

)

Cereal serialization method.

Definition at line 99 of file Layout.h.

setup()

void Layout::setup ( )

virtual

Setup the internal structure of the class Allocate memories to store all layout state.

Setup the internal structure of the class. Allocate memories to store all layout state, no sequential dependency in this method

Reimplemented in Layout911.

Definition at line 82 of file Layout.cpp.

Member Data Documentation

dist2_

CompleteMatrix Layout::dist2_

Inter-neuron distance squared.

Definition at line 74 of file Layout.h.

dist_

CompleteMatrix Layout::dist_

The true inter-neuron distance.

Definition at line 76 of file Layout.h.

fileLogger_

log4cplus::Logger Layout::fileLogger_

protected

Definition at line 93 of file Layout.h.

numEndogenouslyActiveNeurons_

BGSIZE Layout::numEndogenouslyActiveNeurons_

Number of endogenously active neurons.

Definition at line 85 of file Layout.h.

numVertices_

int Layout::numVertices_

protected

Total number of vertices in the graph.

Definition at line 95 of file Layout.h.

probedNeuronList_

vector<int> Layout::probedNeuronList_

Probed neurons list. // ToDo: Move this to Hdf5 recorder once its implemented in project -chris.

Definition at line 79 of file Layout.h.

starterMap_

vector<bool> Layout::starterMap_

The starter existence map (T/F).

Definition at line 83 of file Layout.h.

vertexTypeMap_

vector<vertexType> Layout::vertexTypeMap_

The vertex type mao, (INH, EXC).

Definition at line 81 of file Layout.h.

vertices_

unique_ptr<AllVertices> Layout::vertices_

protected

Definition at line 91 of file Layout.h.

xloc_

VectorMatrix Layout::xloc_

Store neuron i's x location.

Definition at line 70 of file Layout.h.

yloc_

VectorMatrix Layout::yloc_

Store neuron i's y location.

Definition at line 72 of file Layout.h.

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The documentation for this class was generated from the following files:

• Simulator/Layouts/Layout.h
• Simulator/Layouts/Layout.cpp