LayoutNeuro Class Reference

Inheritance diagram for LayoutNeuro:

Collaboration diagram for LayoutNeuro:

Public Member Functions
virtual void	registerGraphProperties () override
	Register vertex properties with the GraphManager.
virtual void	printParameters () const override
virtual void	generateVertexTypeMap () override
	Creates a vertex type map.
virtual void	initStarterMap () override
virtual edgeType	edgType (int srcVertex, int destVertex) override
void	printLayout ()
	Prints the layout, used for debugging.
template<class Archive >
void	serialize (Archive &archive)
	Cereal serialization method.
Public Member Functions inherited from Layout
	Layout ()
	Constructor.
AllVertices &	getVertices () const
	Returns reference to Vertices.
virtual void	setup ()
virtual void	loadParameters ()
	Load member variables from configuration files. Registered to OperationManager as Operation::loadParameters.
virtual int	getNumVertices () const
	Returns the number of vertices managed by the Layout.
template<class Archive >
void	serialize (Archive &archive)
	Cereal serialization method.

Static Public Member Functions
static Layout *	Create ()

Additional Inherited Members
Public Attributes inherited from Layout
VectorMatrix	xloc_
	Store neuron i's x location.
VectorMatrix	yloc_
	Store neuron i's y location.
CompleteMatrix	dist2_
	Inter-neuron distance squared.
CompleteMatrix	dist_
	The true inter-neuron distance.
vector< int >	probedNeuronList_
	Probed neurons list. // ToDo: Move this to Hdf5 recorder once its implemented in project -chris.
vector< vertexType >	vertexTypeMap_
	The vertex type mao, (INH, EXC).
vector< bool >	starterMap_
	The starter existence map (T/F).
BGSIZE	numEndogenouslyActiveNeurons_
	Number of endogenously active neurons.
Protected Attributes inherited from Layout
unique_ptr< AllVertices >	vertices_
log4cplus::Logger	fileLogger_
int	numVertices_
	Total number of vertices in the graph.

Detailed Description

Definition at line 24 of file LayoutNeuro.h.

Constructor & Destructor Documentation

LayoutNeuro()

LayoutNeuro::LayoutNeuro

(

)

Definition at line 17 of file LayoutNeuro.cpp.

Member Function Documentation

Create()

static Layout * LayoutNeuro::Create ( )

inlinestatic

Definition at line 30 of file LayoutNeuro.h.

edgType()

edgeType LayoutNeuro::edgType ( int srcVertex, int destVertex )

overridevirtual

Returns the type of synapse at the given coordinates

Parameters

srcVertex	integer that points to a Neuron in the type map as a source.
destVertex	integer that points to a Neuron in the type map as a destination.

Returns

type of the synapse.

Implements Layout.

Definition at line 105 of file LayoutNeuro.cpp.

generateVertexTypeMap()

void LayoutNeuro::generateVertexTypeMap ( )

overridevirtual

Creates a vertex type map.

Creates a randomly ordered distribution with the specified numbers of vertex types.

Parameters

numVertices

number of the vertices to have in the type map.

Reimplemented from Layout.

Definition at line 47 of file LayoutNeuro.cpp.

initStarterMap()

void LayoutNeuro::initStarterMap ( )

overridevirtual

Populates the starter map. Selects num_endogenously_active_neurons excitory neurons and converts them into starter vertices.

Populates the starter map. Selects numStarter excitory neurons and converts them into starter neurons.

Parameters

numVertices

number of vertices to have in the map.

Reimplemented from Layout.

Definition at line 83 of file LayoutNeuro.cpp.

printParameters()

void LayoutNeuro::printParameters ( ) const

overridevirtual

Prints out all parameters to logging file. Registered to OperationManager as Operation::printParameters

Reimplemented from Layout.

Definition at line 37 of file LayoutNeuro.cpp.

registerGraphProperties()

void LayoutNeuro::registerGraphProperties ( )

overridevirtual

Register vertex properties with the GraphManager.

Reimplemented from Layout.

Definition at line 22 of file LayoutNeuro.cpp.

serialize()

template<class Archive >

void LayoutNeuro::serialize

(

Archive &

archive

)

Cereal serialization method.

Definition at line 66 of file LayoutNeuro.h.

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The documentation for this class was generated from the following files:

• Simulator/Layouts/Neuro/LayoutNeuro.h
• Simulator/Layouts/Neuro/LayoutNeuro.cpp