ConnGrowth Class Reference

Inheritance diagram for ConnGrowth:

Collaboration diagram for ConnGrowth:

Classes
struct	GrowthParams

Public Member Functions
virtual void	setup () override
	Setup the internal structure of the class (allocate memories and initialize them).
virtual void	loadParameters () override
virtual void	registerHistoryVariables () override
	Registers history variables for recording during simulation.
virtual void	printParameters () const override
virtual bool	updateConnections () override
template<class Archive >
void	serialize (Archive &archive)
	Cereal serialization method.
void	printRadii () const
	Prints radii.
virtual void	updateEdgesWeights () override
Public Member Functions inherited from Connections
virtual	~Connections ()=default
	Destructor.
AllEdges &	getEdges () const
	Returns reference to Synapses/Edges.
EdgeIndexMap &	getEdgeIndexMap () const
	Returns a reference to the EdgeIndexMap.
void	createEdgeIndexMap ()
	Calls Synapses to create EdgeIndexMap and stores it as a member variable.
virtual void	registerGraphProperties ()
	Register edge properties with the GraphManager.
template<class Archive >
void	serialize (Archive &archive)
	Cereal serialization method.

Static Public Member Functions
static Connections *	Create ()

Public Attributes
GrowthParams	growthParams_
	structure to keep growth parameters
int	radiiSize_
	radii size
CompleteMatrix	W_
	synapse weight
VectorMatrix	radii_
	neuron radii
VectorMatrix	rates_
	spiking rate
CompleteMatrix	delta_
	distance between connection frontiers
CompleteMatrix	area_
	areas of overlap
VectorMatrix	outgrowth_
	neuron's outgrowth
VectorMatrix	deltaR_
	displacement of neuron radii

Additional Inherited Members
Protected Attributes inherited from Connections
unique_ptr< AllEdges >	edges_
unique_ptr< EdgeIndexMap >	synapseIndexMap_
	TODO: Rename to edgeIndexMap_ since this is a base class.
log4cplus::Logger	fileLogger_
log4cplus::Logger	edgeLogger_

Detailed Description

Definition at line 82 of file ConnGrowth.h.

Constructor & Destructor Documentation

ConnGrowth()

ConnGrowth::ConnGrowth

(

)

Definition at line 52 of file ConnGrowth.cpp.

Member Function Documentation

Create()

static Connections * ConnGrowth::Create ( )

inlinestatic

Definition at line 88 of file ConnGrowth.h.

loadParameters()

void ConnGrowth::loadParameters ( )

overridevirtual

Load member variables from configuration file. Registered to OperationManager as Operations::op::loadParameters

Implements Connections.

Definition at line 87 of file ConnGrowth.cpp.

printParameters()

void ConnGrowth::printParameters ( ) const

overridevirtual

Prints out all parameters to logging file. Registered to OperationManager as Operation::printParameters

Implements Connections.

Definition at line 113 of file ConnGrowth.cpp.

printRadii()

void ConnGrowth::printRadii

(

)

const

Prints radii.

Definition at line 327 of file ConnGrowth.cpp.

registerHistoryVariables()

void ConnGrowth::registerHistoryVariables ( )

overridevirtual

Registers history variables for recording during simulation.

Implements Connections.

Definition at line 334 of file ConnGrowth.cpp.

serialize()

template<class Archive >

void ConnGrowth::serialize

(

Archive &

archive

)

Cereal serialization method.

Definition at line 206 of file ConnGrowth.h.

setup()

void ConnGrowth::setup ( )

overridevirtual

Setup the internal structure of the class (allocate memories and initialize them).

Setup the internal structure of the class (allocate memories and initialize them).

Parameters

layout	Layout information of the neural network.
vertices	The vertex list to search from.
synapses	The Synapse list to search from.

Implements Connections.

Definition at line 62 of file ConnGrowth.cpp.

updateConnections()

bool ConnGrowth::updateConnections ( )

overridevirtual

Update the connections status in every epoch.

Returns

true if successful, false otherwise.

Reimplemented from Connections.

Definition at line 130 of file ConnGrowth.cpp.

updateEdgesWeights()

void ConnGrowth::updateEdgesWeights ( )

overridevirtual

Update the weights of the Synapses in the simulation. To be clear, iterates through all source and destination neurons and updates their synaptic strengths from the weight matrix. Note: Platform Dependent.

Update the weight of the Synapses in the simulation. To be clear, iterates through all source and destination neurons and updates their synaptic strengths from the weight matrix. Note: Platform Dependent.

Reimplemented from Connections.

Definition at line 245 of file ConnGrowth.cpp.

Member Data Documentation

area_

CompleteMatrix ConnGrowth::area_

areas of overlap

Definition at line 194 of file ConnGrowth.h.

delta_

CompleteMatrix ConnGrowth::delta_

distance between connection frontiers

Definition at line 191 of file ConnGrowth.h.

deltaR_

VectorMatrix ConnGrowth::deltaR_

displacement of neuron radii

Definition at line 200 of file ConnGrowth.h.

growthParams_

GrowthParams ConnGrowth::growthParams_

structure to keep growth parameters

Definition at line 176 of file ConnGrowth.h.

outgrowth_

VectorMatrix ConnGrowth::outgrowth_

neuron's outgrowth

Definition at line 197 of file ConnGrowth.h.

radii_

VectorMatrix ConnGrowth::radii_

neuron radii

Definition at line 185 of file ConnGrowth.h.

radiiSize_

int ConnGrowth::radiiSize_

radii size

Definition at line 179 of file ConnGrowth.h.

rates_

VectorMatrix ConnGrowth::rates_

spiking rate

Definition at line 188 of file ConnGrowth.h.

W_

CompleteMatrix ConnGrowth::W_

synapse weight

Definition at line 182 of file ConnGrowth.h.

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The documentation for this class was generated from the following files:

• Simulator/Connections/Neuro/ConnGrowth.h
• Simulator/Connections/Neuro/ConnGrowth.cpp
• Simulator/Connections/Neuro/ConnGrowth_d.cpp